DockingServer Reference

• Bikadi, Z., Hazai, E.
  Application of the PM6 semi-empirical method to modeling proteins enhances docking accuracy of AutoDock
  J. Cheminf. 1, 15 (2009)

Additional References

• AutoDock 4

  Huey, R., Morris, G. M., Olson, A. J. and Goodsell, D. S.
  A Semiempirical Free Energy Force Field with Charge-Based Desolvation
  J. Comput. Chem. 28, 1145-1152 (2007)
  
  

• MOPAC2009

  Stewart, J. J. P.
  OpenMOPAC.net
  Stewart Computational Chemistry, Colorado Springs, CO, USA (2009)

• Marvin

  Marvin is used for drawing, displaying and characterizing chemical structures, substructures and reactions
  http://www.chemaxon.com Marvin 5.0, ChemAxon (2008)
  

• Jmol

  Jmol: an open-source Java viewer for chemical structures in 3D
  http://jmol.sourceforge.net