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 Post subject: Identification of non-binding residues
PostPosted: Thu Jan 15, 2015 3:40 pm 

Joined: Tue Jan 13, 2015 2:12 pm
Posts: 4
Is it possible to identify the amino acids on the protein which are not involved in ligand binding? I would like to see which type of residues are nearby.


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 Post subject: Re: Identification of non-binding residues
PostPosted: Thu Jan 15, 2015 6:00 pm 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
You should check the Interaction table tab for identifying residues involved in ligand binding.


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 Post subject: Re: Identification of non-binding residues
PostPosted: Thu Jan 15, 2015 6:04 pm 

Joined: Tue Jan 13, 2015 2:12 pm
Posts: 4
I can see interacting proteins, but I am looking to see ones which do not interact with my ligand, but are physically close to the ligand.


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 Post subject: Re: Identification of non-binding residues
PostPosted: Mon Jan 19, 2015 5:46 pm 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
If a residue is close, it is interacting in some way. Maybe not specifically, like a hydrogen bonding but surely contributes to the binding energy.


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