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 Post subject: Help with two ligands docking
PostPosted: Wed Aug 17, 2011 7:48 pm 

Joined: Wed Jul 06, 2011 4:58 pm
Posts: 4
Hi,

I am trying to dock two ligands into my protein. After I docked the first ligand into my protein, I did second docking with generated pdb file. After I finished, I opened the pdb file but could only see one ligand in the protein. What was wrong?

Thanks,

noontime


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 Post subject: Re: Help with two ligands docking
PostPosted: Thu Aug 18, 2011 4:24 pm 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
Hello,

most probably you have not selected the first ligand in the first step of the protein setup in the Heteroatoms box in the second docking. You must select the ligand if you want it to keep it during the docking. If it is not the problem, please share the url of the docking in question.

Best Regards,
Zsolt


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 Post subject: Re: Help with two ligands docking
PostPosted: Tue Aug 23, 2011 2:10 pm 

Joined: Wed Jul 06, 2011 4:58 pm
Posts: 4
Hi Zsolt,

Thank you very much for your quick reply. I followed your advice and solved my problem.

All the best,

Noontime


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