error message

drbigdog7560 · **Joined:** Mon Oct 11, 2010 3:12 pm **Posts:** 1

I created my ligand in your chem drawing program and during the initalizing stage I received the following error message: The file homokozo/2010101117324707/ligand0.mol2 is empty

Please advise me on how to solve this problem.

bikadi · **Joined:** Wed Oct 29, 2008 2:24 pm **Posts:** 203

When the ligand optimization fails, this is the most common error message. Try to change the optimization method, the most error-proof one is the Dreiding method.

Kind Regards,
Zsolt

sidrarafi · **Joined:** Sun Feb 10, 2013 7:57 am **Posts:** 1

hi , i performed docking on 32 compounds as ligand with hep C receptor. all the compound were dock except 4. these 4 showed the error msg "be sure that the grid box is enough to contain this large ligand, tryig to increase the max orientation".
i increase the max orientation upto 1500 in dock.in file but the error massage remain the same.

kindly tell my how i can solve this problem.

regards.
SIDRA.

hazaie · **Joined:** Wed Oct 29, 2008 2:24 pm **Posts:** 40

Please post a link to the error page.