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 Post subject: Docking gallery image
PostPosted: Fri Feb 26, 2010 7:21 am 

Joined: Thu Jan 28, 2010 5:59 am
Posts: 3
Hi,
I am a customer for dockingserver. And I have finished some of the dockings and tried to analyze the results. for the gallery image, it is only cartoon type. I would like also to have the some other type of docking image (protein shown as surface, and the ligand shown as stick or sphere). However, I tried using Pymol to get this change, and I only can see the protein surface image but not ligand. Please let me know how I can get the docking image with 3D image and whether it is possible that I can get the docking movie to show the docking process. Thanks for your advice.

Jessie


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 Post subject: Re: Docking gallery image
PostPosted: Sat Feb 27, 2010 10:23 am 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
Hello,

the best place to create high quality images is the "Geometry" tab in the results menu. In the attached image you can see the options which produced a surface representation near to the binding site and spheres representation for the ligand. The image can be downloaded using the save image button below the Java window. We have not considered yet to store the coordinates during the docking process, thus creating this kind of movie is not possible right now, but it is a great idea and we will think about it how we can do this.

Kind Regards,
Zsolt


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