Molecular Docking Server

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Author:  jrestrep [ Thu Apr 04, 2013 8:43 pm ]
Post subject:  jrestrep

how I can get the RMSD?

Author:  hazaie [ Tue Apr 09, 2013 5:16 pm ]
Post subject:  Re: jrestrep

Which RMSD do you mean? Reproduction of x-ray structures with docking?

Author:  jrestrep [ Sat Jun 01, 2013 7:56 pm ]
Post subject:  Re: jrestrep

Reproduction of x-ray structures with docking

Author:  jrestrep [ Wed Jun 05, 2013 12:42 pm ]
Post subject:  Re: jrestrep

Mrs. Dockingserver, best regards

I'm Dr. Jelem restrepo, I have a subscription to your page, however for over a month present problems with the site, the docking does not load, I can not download:
*. map files can be Associated with Autodock, and it contains several information about the protein. Calculates AutoGrid two different types of charcoal grid maps, one for aliphatic carbons in the ligand (*. C-MAP) and one for aromatic carbons in the ligand (*.
The Grid Map File Field has *. Maps.fld extension. This is Essentially two files in one. It is Both an AVS field file, and AutoDock input File with AutoDock-specific information "hidden" from AVS in the comments at the head of the file. AutoDock uses this file to check That All the maps it reads in are compatible with one another and itself.
The AutoDock Docking Parameter file has *. Dpf extension.
The Protein Data Bank with Partial Changes file has *. Pdbq extension.

On the other hand often does not allow me to access the page, in order are too many problems that are presenting and need to please solve, and that's what pays the subscription.

No more to narrow best regards

Pd. Respond the email as it is not the first time I write asking this my advice and resolution of the problem

Author:  jrestrep [ Wed Jun 05, 2013 12:45 pm ]
Post subject:  Re: jrestrep

That text was sent to your email, several times I have asked for advice and use the dockinserver payment, I need to answer the email we send

Author:  hazaie [ Wed Jun 05, 2013 6:58 pm ]
Post subject:  Re: jrestrep

Dear Dr. Jelem,

the mentioned files can be downloaded using the "Download everything as a zip archive" link on the given protein. Unfortunatelly we did not get any message from you via email; we always respond to emails ( Please send us an email if you have more specific questions or comments.

Best Regards,
Eszter Hazai, PhD

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