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 Post subject: the main driving force and the distance
PostPosted: Sat Feb 25, 2012 8:26 pm 

Joined: Wed Oct 19, 2011 12:03 am
Posts: 4
How can I know the main driving force of the interaction between the ligand and protein? Furthermore, the intrinsic fluorescence of HSA is manly due to the sole tryptophan residue (Trp-214) in the hydrophobic cavity of subdomain IIA.But the result did not presence the interation between the ligand and Trp-214.


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 Post subject: Re: the main driving force and the distance
PostPosted: Sun Feb 26, 2012 8:00 pm 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
I do not think that there is such a thing that main driving force - you can check out the interactions between the ligand and the protein in the interaction table. Your problem related to Tyr can be a consequence of an inappropriate simulation box selection, please check it out, isthat Tyr in the box? For albumin, we have a one-click docking solution, maybe you can try that too: http://albumin.althotas.com


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