Molecular Docking Server

Help with two ligands docking
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Author:  noontime [ Wed Aug 17, 2011 7:48 pm ]
Post subject:  Help with two ligands docking


I am trying to dock two ligands into my protein. After I docked the first ligand into my protein, I did second docking with generated pdb file. After I finished, I opened the pdb file but could only see one ligand in the protein. What was wrong?



Author:  bikadi [ Thu Aug 18, 2011 4:24 pm ]
Post subject:  Re: Help with two ligands docking


most probably you have not selected the first ligand in the first step of the protein setup in the Heteroatoms box in the second docking. You must select the ligand if you want it to keep it during the docking. If it is not the problem, please share the url of the docking in question.

Best Regards,

Author:  noontime [ Tue Aug 23, 2011 2:10 pm ]
Post subject:  Re: Help with two ligands docking

Hi Zsolt,

Thank you very much for your quick reply. I followed your advice and solved my problem.

All the best,


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