Molecular Docking Server
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error in docking
https://www.dockingserver.com/forum/viewtopic.php?f=4&t=162
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Author:  Nashwa [ Sun Mar 20, 2016 4:36 pm ]
Post subject:  error in docking

I have a problem with docking process

http://www.dockingserver.com/web/docking/319775/

Author:  bikadi [ Thu Mar 24, 2016 3:38 pm ]
Post subject:  Re: error in docking

I have restarted the table generation process, it should fix this error.

Author:  rajesh0950 [ Wed Sep 27, 2017 1:43 pm ]
Post subject:  Re: error in docking

Dear Admin,

I am facing problem in the docking process,
I found the error message.

Prepare docking parameter file – error The error message:
Traceback (most recent call last):
File "tools/prepare_dpf4.py", line 197, in ?
dm.set_ligand(ligand_filename)
File "tools/prepare_dpf4.py", line 55, in set_ligand
self.ligand = Read(ligand_filename)[0]
File "/usr/lib/python2.4/site-packages/MGLToolsPckgs/MolKit/__init__.py", line 51, in Read
molecules = parser.parse()
File "/usr/lib/python2.4/site-packages/MGLToolsPckgs/MolKit/pdbParser.py", line 681, in parse
self.pdbRecordParser[record](records)
File "/usr/lib/python2.4/site-packages/MGLToolsPckgs/MolKit/pdbParser.py", line 1496, in parse_PDB_ROOT
self.mol.ROOT = self.mol.chains.residues.atoms.get(lambda x: x._uniqIndex==0)[0]
File "/usr/lib/python2.4/UserList.py", line 28, in __getitem__
def __getitem__(self, i): return self.data[i]
IndexError: list index out of range.

Kindly inform me, what I have to do for removing the error.
My mail ID- rajesh@bdu.ac.in

Thanks for informing,

regards,
Rajesh

Author:  rajesh0950 [ Wed Sep 27, 2017 1:51 pm ]
Post subject:  Re: error in docking

Dear Admin,

I would like to purchase the 1 month subscription in Docking server. before, I would like to check the docking program in 3 days pack.

I have recently found another error in retrieving ligand from RCSB given below.

Kindly check and inform me. How to fix the error. I would like to buy the 3 days package and use the server.

Mail: rajesh@bdu.ac.in

Download error

Unknown problem while trying to retrieve data from RCSB data.

Thanking you,

Rajesh

Author:  bikadi [ Fri Sep 29, 2017 11:25 am ]
Post subject:  Re: error in docking

Hello, please provide more information to be able to check this issue.

Author:  rajeshirsea [ Fri Mar 30, 2018 9:28 am ]
Post subject:  Re: error in docking

Dear sir,

After the ligand and protein were submitted for docking. when I press to start, I receive warning message. What should I do?
but the docking is computing status.
Is it the procedure correct?
Kindly inform me.
Username:rajeshirsea

Thanking you,


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