Molecular Docking Server

Docking ligands with enzyme
Page 1 of 1

Author:  rakcops123 [ Sun Feb 23, 2014 12:55 pm ]
Post subject:  Docking ligands with enzyme

I am interested know the following:
If I dock the same ligand drawn and prepared in docking server which is available as complex with the same protein as in protein data bank (pdb).
Do I expect the same binding orientations, same bonding interactions (e.g. hydrogen, ionic etc) with the same amino acid in protein.
Whether the ligands will be superimposible in the active sites?

Author:  bikadi [ Tue Feb 25, 2014 4:24 pm ]
Post subject:  Re: Docking ligands with enzyme

Yes, you can choose an option in the result viewer where you can show the original ligand.

Page 1 of 1 All times are UTC
Powered by phpBB © 2000, 2002, 2005, 2007 phpBB Group