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 Post subject: Docking ligands with enzyme
PostPosted: Sun Feb 23, 2014 12:55 pm 

Joined: Thu Feb 20, 2014 5:46 am
Posts: 4
I am interested know the following:
If I dock the same ligand drawn and prepared in docking server which is available as complex with the same protein as in protein data bank (pdb).
Do I expect the same binding orientations, same bonding interactions (e.g. hydrogen, ionic etc) with the same amino acid in protein.
Whether the ligands will be superimposible in the active sites?


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 Post subject: Re: Docking ligands with enzyme
PostPosted: Tue Feb 25, 2014 4:24 pm 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 203
Yes, you can choose an option in the result viewer where you can show the original ligand.


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