Molecular Docking Server

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Author:  adithyags [ Sun Mar 22, 2009 5:59 pm ]
Post subject:  Error&Settings

Hi after i upload the ligand and my protein and proceed to settings the following error is generated

Wrong attach:ligand0.pdbqt

Can anyone please help me with this?

Author:  bikadi [ Mon Mar 23, 2009 8:04 am ]
Post subject:  Re: Error&Settings

You cannot upload pdbqt files, it is generated during the ligand setup. The most popular allowed formats are: pdb, mol, mol2. Additionaly, you should keep in mind that DockingServer is not a protein-protein docking server, but it allows to dock small molecules to proteinsor DNA. Thus, do not upload whole proteins into the ligand folder.

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