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 Post subject: error message
PostPosted: Mon Oct 11, 2010 3:47 pm 

Joined: Mon Oct 11, 2010 3:12 pm
Posts: 1
I created my ligand in your chem drawing program and during the initalizing stage I received the following error message: The file homokozo/2010101117324707/ligand0.mol2 is empty


Please advise me on how to solve this problem.


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 Post subject: Re: error message
PostPosted: Mon Oct 11, 2010 8:01 pm 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
When the ligand optimization fails, this is the most common error message. Try to change the optimization method, the most error-proof one is the Dreiding method.

Kind Regards,
Zsolt


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 Post subject: Re: error message
PostPosted: Sun Feb 10, 2013 8:05 am 

Joined: Sun Feb 10, 2013 7:57 am
Posts: 1
hi , i performed docking on 32 compounds as ligand with hep C receptor. all the compound were dock except 4. these 4 showed the error msg "be sure that the grid box is enough to contain this large ligand, tryig to increase the max orientation".
i increase the max orientation upto 1500 in dock.in file but the error massage remain the same.

kindly tell my how i can solve this problem.

regards.
SIDRA.


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 Post subject: Re: error message
PostPosted: Fri Feb 15, 2013 12:50 pm 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 40
Please post a link to the error page.


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