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 Post subject: error
PostPosted: Fri Jan 11, 2013 1:31 pm 

Joined: Tue Jan 08, 2013 1:14 pm
Posts: 4
Halllo, may I know what kind of problem got error in my MT submission ?
Thanks,

Rita


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 Post subject: Re: error
PostPosted: Sun Jan 13, 2013 8:04 am 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
We need the error message you got to be able to help.


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 Post subject: Re: error
PostPosted: Sun Jan 13, 2013 8:22 am 

Joined: Tue Jan 08, 2013 1:14 pm
Posts: 4
bikadi wrote:
We need the error message you got to be able to help.


Sorry, I don't see any error message:

Calculating protein charges and solvatation parameters – error [Restart]
Create protein snapshot – done [Restart]
Protein clean – done [Restart]


Thanks,

rp


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 Post subject: Re: error
PostPosted: Thu Jan 17, 2013 8:10 am 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 40
Please send me a link to this page where this error message appears.

thanks


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 Post subject: Re: error
PostPosted: Thu Jan 17, 2013 1:47 pm 

Joined: Tue Jan 08, 2013 1:14 pm
Posts: 4
http://www.dockingserver.com/web/dockin ... ns/179757/?

this is the page. Where you read "computing" there war "error", but I refreshed. However, as I could not understand what to change, after computing there will be error again.

Thanks,

Rita


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 Post subject: Re: error
PostPosted: Sat Jan 19, 2013 11:33 am 

Joined: Wed Oct 29, 2008 2:24 pm
Posts: 204
Hi,

it is a fantastic structure, I have never seen anything like this. However, it is not possible to carry out molecular docking in such an extremely huge space composed by over 100 protein chains. As I see 3 different chains compose this huge structure - you should select only 3 chains in the first, protein cleaning step and go further with that minimal structure.

Best Regards,
Zsolt


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 Post subject: Re: error
PostPosted: Mon Jan 21, 2013 4:50 pm 

Joined: Tue Jan 08, 2013 1:14 pm
Posts: 4
Thank you, I understand the issue. I am glad that you liked it ! The problem is that it seems that the minimal structure (tubulin) behaves differently from the tubular composite one (microtubule), and the research is devoted to study this difference.
I know that it too huge, I just tried :roll: . Thank you very much for your support,

Rita


bikadi wrote:
Hi,

it is a fantastic structure, I have never seen anything like this. However, it is not possible to carry out molecular docking in such an extremely huge space composed by over 100 protein chains. As I see 3 different chains compose this huge structure - you should select only 3 chains in the first, protein cleaning step and go further with that minimal structure.

Best Regards,
Zsolt


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