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Explicit difinition of the ligand binding site
https://www.dockingserver.com/forum/viewtopic.php?f=2&t=84
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Author:  hyperown [ Mon Jul 16, 2012 6:12 pm ]
Post subject:  Explicit difinition of the ligand binding site

Dear developers!


I'd like to know how I could define explicitly ligand binding site of my protein for further more accurate protein-ligand docking.

In the protein preparation setup I've find possibility to select manualy some amino acinds of my protein from its sequence. Does this selection defines ligand-binding site ?


Thanks for help


Gleb

Author:  hyperown [ Tue Jul 17, 2012 7:54 pm ]
Post subject:  Re: Explicit difinition of the ligand binding site

Dear developers!

Also I'd like to know about possibility of downloading pdb structures of the resulted merged protein-ligand complexes for the accademical users. In the output data I've found download option but server tell me 'Please Subscribe!' Is there any possibility for the accademical users to obtain such pdbs as well as some free extensions to the 2 default docking\per day ?


Gleb

Author:  hazaie [ Thu Jul 19, 2012 10:56 am ]
Post subject:  Re: Explicit difinition of the ligand binding site

Dear Gleb,

please send us an e-mail to info@virtuadrug.com and we can solve your issues.

Kind Regards,
Eszter Hazai

hyperown wrote:
Dear developers!

Also I'd like to know about possibility of downloading pdb structures of the resulted merged protein-ligand complexes for the accademical users. In the output data I've found download option but server tell me 'Please Subscribe!' Is there any possibility for the accademical users to obtain such pdbs as well as some free extensions to the 2 default docking\per day ?


Gleb

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