Molecular Docking Server
https://www.dockingserver.com/forum/

Simultaion box size
https://www.dockingserver.com/forum/viewtopic.php?f=2&t=66
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Author:  vittuperkele [ Mon Jan 16, 2012 8:12 pm ]
Post subject:  Simultaion box size

I have noticed that if I set the simulation box size to 100x100x100 Å, I cannot get any sensible video output from dockingvideo.com .. I Reckon the problem is not dockingserver.com's but anyway. It sets the box values haywire.

Author:  bikadi [ Tue Jan 17, 2012 9:33 am ]
Post subject:  Re: Simultaion box size

Sure, this box size is too big for DockingVideo right now. We have just launched DockingVideo and are not sure that docking community is interested in a video output application or not - so we will develop DockingVideo further if it will be widely accepted.

Author:  vittuperkele [ Wed Jan 18, 2012 7:31 pm ]
Post subject:  Re: Simultaion box size

bikadi wrote:
Sure, this box size is too big for DockingVideo right now. We have just launched DockingVideo and are not sure that docking community is interested in a video output application or not - so we will develop DockingVideo further if it will be widely accepted.



I do not know if scientific community is - but as hobby I am video jockey at clubs and I would love to play some docking scenes.. They should, however, be of hiqh quality and every variable (visualization, video zooming/posistioning etc) should be available for manual adjustment.. It should be free service anyway, so I think if you are going to develope it further, you do it on hobby-based thing...?

Author:  bikadi [ Thu Jan 19, 2012 3:05 pm ]
Post subject:  Re: Simultaion box size

Sure, I know that it should be improved in flexibility and to be more fancy :) This project started when one of our client requested a video from his docking calculation and we decided to put the methodology on the web. When we will have more free time, we will surely develop the site further.

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